Not long ago I had a failed mysql upgrade on cpanel. It failed because some guy on the server had some type of log table going and it used up all the disk space left, around 4 gigs so mysql would not start, upgrade failed and many databases were damaged.
So I looked and found this neat command here. It takes a lil time but it worked for me with over 200 accounts.
mysqlcheck -A -h localhost -u root -r -p
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